just hammer into them to keep the model tidy - you know, grouping geometry or creating components, where repetitions occur (the latter keeps the file size down). it is important for the students to understand the difference between groups and components; can save a lot of time lateron.
but spend enough time on showing them, how to enter groups to alter them and that it is impossible to manipulate a group, if you are outside of it (as if you try drawing on a sheet of paper that is covered by plastic wrap).
I dont know, what is your method of building a model, but I would advice, allways draw in layer0 (never change the active layer). if you want to use layers, group elements and move them into different layers. thus you avoid messing arround with the layers (group in one layer, geometry within the group in a different layer).
oh yes. and force them to keep their hands off the camera tools buttons (orbit, pan, zoom). that is what you have got the scroll wheel for (press scroll wheel - orbit; press scroll wheel + shift - pan; roll scroll wheel - zoom). like that they will change their point of view much more often and therefore avoid drawing in wron axes.
that is quite much for one lesson. it is better to start using layers not untill you are familiar with modeling and navigating in a desing.