Hi Darkhelmet, hi folks.
Dont use a circle with 4 segments to draw a square. Use the Polygon Tool instead. With a circle, the smoothed properties of the endpoints will be set to true and if you extrude you will have to unsmooth the resulting edges.
To get the square to have its sides parallel to axes, rotate it by 45° after drawing it, providing that you also drew the radius parallel to an axis.
Just ideas.