Ok, you are right, the issue seems to be somehow layer related. the one line seems to be on layer2, while the rest of the component is on layer0. I had layer0 turned invisible so the line would not delete.
I usually must have the layer set visible as I have had the main model on the different layer for awhile.
Should I change the way I am using the layers? I did this mainly so I can make 2D exports as the drawing progressed without any of the work area visible.
Not sure if my model needs changing, but at least I know whats going on now!
Thanks so very much for your help.